chr2:47643569:G>T Detail (hg19) (MSH2)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr2:47,643,569-47,643,569
hg38	chr2:47,416,430-47,416,430 View the variant detail on this assembly version.

HGVS

MSH2

Type	Transcript	Protein
RefSeq	NM_000251.2:c.1076+1G>T
	NM_001258281.1:c.878+1G>T
Ensemble	ENST00000233146.7:c.1076+1G>T
	ENST00000406134.5:c.1076+1G>T
	ENST00000543555.6:c.878+1G>T
	ENST00000645506.1:c.1076+1G>T
	ENST00000713854.1:c.926+1G>T
	ENST00000713860.1:c.1076+1G>T
	ENST00000713861.1:c.1076+1G>T
	ENST00000713919.1:c.797+1G>T

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Likely pathogenic
Review star
Show details

Links

MSH2

Type	Database	ID	Link
Gene	MIM	609309	OMIM
	HGNC	7325	HGNC
	Ensembl	ENSG00000095002	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Likely pathogenic	2019-06-21	reviewed by expert panel	Lynch syndrome	germline somatic	Detail
Pathogenic	2021-04-21	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2023-07-31	criteria provided, single submitter	Lynch syndrome 1	unknown	Detail
Pathogenic	2023-10-20	criteria provided, single submitter	Hereditary nonpolyposis colorectal neoplasms	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.332	Hereditary Nonpolyposis Colorectal Cancer	NA	CLINVAR		Detail
0.121	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000251.3(MSH2):c.1076+1G>T AND Lynch syndrome	ClinVar	Detail
NM_000251.3(MSH2):c.1076+1G>T AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000251.3(MSH2):c.1076+1G>T AND Lynch syndrome 1	ClinVar	Detail
NM_000251.3(MSH2):c.1076+1G>T AND Hereditary nonpolyposis colorectal neoplasms	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs267607940 dbSNP
Genome: hg19
Position: chr2:47,643,569-47,643,569
Variant Type: snv
Reference Allele: G
Alternative Allele: T

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